Season 1
- Episode 1: Pilot: Part 1
- Episode 2: Pilot: Part 2
- Episode 3: Tabula Rasa
- Episode 4: Walkabout
- Episode 5: White Rabbit
- Episode 6: House of the Rising Sun
- Episode 7: The Moth
- Episode 8: Confidence Man
- Episode 9: Solitary
- Episode 10: Raised by Another
- Episode 11: All the Best Cowboys Have Daddy Issues
- Episode 12: Whatever the Case May Be
- Episode 13: Hearts and Minds
- Episode 14: Special
- Episode 15: Homecoming
- Episode 16: Outlaws
- Episode 17: …In Translation
- Episode 18: Numbers
- Episode 19: Deus Ex Machina
- Episode 20: Do No Harm
- Episode 21: The Greater Good
- Episode 22: Born to Run
- Episode 23: Exodus: Part 1
- Episode 24: Exodus: Part 2
- Episode 25: Exodus: Part 2
Season 2
- Episode 1: Man of Science, Man of Faith
- Episode 2: Adrift
- Episode 3: Orientation
- Episode 4: Everybody Hates Hugo
- Episode 5: ..And Found
- Episode 6: Abandoned
- Episode 7: The Other 48 Days
- Episode 8: Collision
- Episode 9: What Kate Did
- Episode 10: The 23rd Psalm
- Episode 11: The Hunting Party
- Episode 12: Fire + Water
- Episode 13: The Long Con
- Episode 14: One of Them
- Episode 15: Maternity Leave
- Episode 16: The Whole Truth
- Episode 17: Lockdown
- Episode 18: Dave
- Episode 19: S.O.S.
- Episode 20: Two for the Road
- Episode 21: ?
- Episode 22: Three Minutes
- Episode 23: Live Together, Die Alone
- Episode 24: Live Together, Die Alone
Season 3
- Episode 1: A Tale of Two Cities
- Episode 2: The Glass Ballerina
- Episode 3: Further Instructions
- Episode 4: Every Man for Himself
- Episode 5: The Cost of Living
- Episode 6: I Do
- Episode 7: Not in Portland
- Episode 8: Flashes Before Your Eyes
- Episode 9: Stranger in a Strange Land
- Episode 10: Tricia Tanaka Is Dead
- Episode 11: Enter 77
- Episode 12: Par Avion
- Episode 13: The Man from Tallahassee
- Episode 14: Expos?
- Episode 15: Left Behind
- Episode 16: One of Us
- Episode 17: Catch-22
- Episode 18: D.O.C.
- Episode 19: The Brig
- Episode 20: The Man Behind the Curtain
- Episode 21: Greatest Hits
- Episode 22: Through the Looking Glass
- Episode 23: Through the Looking Glass
Season 4
- Episode 1: The Beginning of the End
- Episode 2: Confirmed Dead
- Episode 3: The Economist
- Episode 4: Eggtown
- Episode 5: The Constant
- Episode 6: The Other Woman
- Episode 7: Ji Yeon
- Episode 8: Meet Kevin Johnson
- Episode 9: The Shape of Things to Come
- Episode 10: Something Nice Back Home
- Episode 11: Cabin Fever
- Episode 12: There’s No Place Like Home: Part 1
- Episode 13: There’s No Place Like Home: Part 2
- Episode 14: There’s No Place Like Home: Part 2
Season 5
- Episode 1: Because You Left
- Episode 2: The Lie
- Episode 3: Jughead
- Episode 4: The Little Prince
- Episode 5: This Place is Death
- Episode 6: 316
- Episode 7: The Life and Death of Jeremy Bentham
- Episode 8: LaFleur
- Episode 9: Namaste
- Episode 10: He’s Our You
- Episode 11: Whatever Happened, Happened
- Episode 12: Dead is Dead
- Episode 13: Some Like It Hoth
- Episode 14: The Variable
- Episode 15: Follow the Leader
- Episode 16: The Incident
- Episode 17: The Incident
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